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How to tune Tomcat 5.5 JVM Memory settings without using the configuration program

I need to configure Tomcat memory settings as part of a larger installation, so manually configuring tomcat with the configuration app after the fact is out of the question. I thought I could just throw the JVM memory settings into the JAVA_OPTS environment variable, but I'm testing that with jconsole to see if it works and it... doesn't.